The achievement of gender equality and ending all forms of disparity in the spheres of sexual and reproductive health are critical components of sustainable development goals. We endeavour to investigate the characteristics and/or structural sources of the gender gap in the reproductive transition among Ethiopian youths. The analysis was carried out using parts of data drawn from the 2011 and 2016 Ethiopian Demographic and Health Survey. The decomposition of the gender gap in the reproductive transition of youths into components was made using the Blinder-Oaxaca decomposition analysis for non-linear models. The results demonstrate that the delay in the age at first marriage among the youth was accompanied by an increase in the prevalence of premarital sex. Furthermore, the findings show that the gender gap in reproductive transition is triggered by both compositional and structural effects of covariates such as education, modern contraceptive use, and media exposure. Thus, in addition to reducing inequalities in education, media exposure, and deprivation between male and female youths, working on the structural components is recommended to close the gender gap in the reproductive transition of youths.